Figure 4
From: Assembling networks of microbial genomes using linear programming
Network of genome affinities and underlying speciation tree for one replicate of the habLGT-high simulation. The network is based on the genome tree shown in Figure S1, using the wLP (panel A) and ndLP (panel B) methods. The edge color represents the distance in the tree measure, where black represents a distance of 0, and lighter colors represent larger distances up to 9 (lightest blue). The edge widths represent the degree of affinity between two nodes, corresponding to the weights obtained from the LP solution.