Towards resolving Lamiales relationships: insights from rapidly evolving chloroplast sequences

Schäferhoff, Bastian; Fleischmann, Andreas; Fischer, Eberhard; Albach, Dirk C; Borsch, Thomas; Heubl, Günther; Müller, Kai F

doi:10.1186/1471-2148-10-352

BMC Ecology and Evolution

Table 1 Taxa, specimens and GenBank acession numbers for sequences used in the present study

From: Towards resolving Lamiales relationships: insights from rapidly evolving chloroplast sequences

Key: Voucher information (collector and number, garden accession number if from living collection, herbarium acronym in braces) is provided for sequences newly generated in this study.

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ISSN: 2730-7182

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Genus	Family	trnK/matK	trnLF	rps16
*Acanthus*	Acanthaceae	Acanthus longifolius Poir.; [GenBank:AJ429326.1]	Acanthus sennii Chiov.; [GenBank:DQ054856.1]	Acanthus sennii Chiov.; [GenBank:DQ059148.1]
*Anastrabe*	Stilbaceae	Anastrabe integerrima E. Mey. Ex Benth.; H. Joffe 171; (M); [EMBL:FN773529]	Anastrabe integerrima E. Mey. Ex Benth.; H. Joffe 171; (M); [EMBL:FN794042 ]	Anastrabe integerrima E. Mey. Ex Benth.; [GenBank:AJ609216]
*Angelonia*	Plantaginaceae	Angelonia sp.; Löhne; BG Bonn; [EMBL:FN773530]	Angelonia sp.; Löhne; BG Bonn; [EMBL:FN794043]	Angelonia sp.; Löhne; BG Bonn; [EMBL:FN794079]
*Antirrhinum*	Plantaginaceae	Antirrhinum majus L.; [GenBank:AF051978]	Antirrhinum majus L.; [GenBank:AY316707]	Antirrhinum majus L.; [GenBank:AJ431054]
*Avicennia*	Acanthaceae	Avicennia germinans L.; [GenBank:AF531771]	Avicennia germinans L.; [GenBank:AY008819]	Avicennia marina (Forssk.) Vierh.; [GenBank:AJ431038]
*Bacopa*	Plantaginaceae	Bacopa monnieri (L.) Pennell; [GenBank:AY667458]	Bacopa monnieri (L.) Pennell; [GenBank:AY492170]	Bacopa monnieri (L.) Pennell; [GenBank:AY492196]
*Barthlottia*	Scrophulariaceae	Barthlottia madagascariensis Eb.Fisch.; A. Erpenbach s.n. (BONN); [EMBL:FN773531]	Barthlottia madagascariensis Eb.Fisch.; A. Erpenbach s.n. (BONN); [EMBL:FN794044]	Barthlottia madagascariensis Eb.Fisch.; A. Erpenbach s.n. (BONN); [EMBL:FN794080]
*Bryodes*	Linderniaceae	Bryodes micrantha Benth.; E. Fischer 10258; (BONN); [EMBL:FN773532]	Bryodes micrantha Benth.; E. Fischer 10258; Madagascar; (BONN); [EMBL:FN794045]	Bryodes micrantha Benth.; E. Fischer 10258; Madagascar; (BONN); [EMBL:FN794081]
*Buchnera*	Orobanchaceae	Buchnera hispida D. Don; E. Fischer 10230; (BONN); [EMBL:FN773533]	Buchnera hispida D. Don; E. Fischer 10230; (BONN); [EMBL:FN79046]	Buchnera hispida D. Don; E. Fischer 10230; (BONN); [EMBL:FN794082]
*Buddleja*	Scrophulariaceae	Buddleja alternifolia Maxim.; [GenBank:AF531772]	Buddleja alternifolia Maxim.; [GenBank:AF380857]	Buddleja asiatica Lour.; [GenBank:AJ431058]
*Byblis*	Byblidaceae	Byblis gigantea Lindl.; [GenBank:AF531774]	Byblis gigantea Lindl.; Kai Müller KM 733; (BONN); [EMBL:FN794047]	Byblis gigantea Lindl.; Kai Müller KM 733; (BONN); [EMBL:FN794083]
*Byblis*	Byblidaceae	Byblis lamellata Conran & Lowrie; Schäferhoff 49; (BONN); [EMBL:FN773534]	Byblis lamellata Conran & Lowrie; Schäferhoff 49; (BONN); [EMBL:FN794048]	Byblis lamellata Conrad & Lowrie; Schäferhoff 49; (BONN); [EMBL:FN794084]
*Byblis*	Byblidaceae	Byblis liniflora Salisb.; Schäferhoff 44; (BONN); [EMBL:FN773535]	Byblis liniflora Salisb.; Schäferhoff 44; (BONN); [EMBL:FN794049]	Byblis liniflora Salisb.; [GenBank:AJ431070]
*Calceolaria*	Calceolariaceae	Calceolaria falklandica Kraenzl.; [GenBank:AY667457.1]	Calceolaria arachnoidea Graham; [GenBank:AY423126]	Calceolaria mexicana Benth.; [GenBank:AJ609202]
*Callicarpa*	Lamiaceae	Callicarpa bodinieri H.Lév.; Schäferhoff 57; (BONN)	Callicarpa japonica Thunb.; [GenBank:AJ505536.1]	Callicarpa japonica Thunb.; [GenBank:AJ505413.1]
*Campsis*	Bignoniaceae	Campsis radicans Seem.; [GenBank:AF531775]	Campsis radicans Seem.; Kai Müller KM701; (BONN); [EMBL:FN794050]	Campsis radicans Seem.; Kai Müller KM701; (BONN); [EMBL:FN794085]
*Carlemannia*	Carlemanniaceae	Carlemannia griffithii Benth.; Grierson, A.J.C. & Long, D.D. 3027; (K); [EMBL:FN773536]	Carlemannia griffithii Benth.; Grierson, A.J.C. & Long, D.D. 3027; (K); [EMBL:FN794051]	Carlemannia griffithii Benth.; Grierson, A.J.C. & Long, D.D. 3027; (K); [EMBL:FN794086]
*Castilleja*	Orobanchaceae	Castilleja linariifolia Benth.; [GenBank:AF051981.1]	Castilleja linariifolia Benth.; [GenBank:EF103866.1]	Castilleja integrifolia L.f.; [GenBank:EF103789.1]
*Clerodendrum*	Lamiaceae	Clerodendrum thomsoniae Balf.; [GenBank:AY840129]	Clerodendrum thomsoniae Balf.; Schäferhoff 39; (BONN); [EMBL:FN794052]	Clerodendrum thomsoniae Balf.; Schäferhoff 39; (BONN); [EMBL:FN794087]
*Conobea*	Plantaginaceae	Conobea multifida (Michx.) Benth.; V. Mühlenbach 278; (M); [EMBL:FN773563]	Conobea multifida (Michx.) Benth.; V. Mühlenbach 278; (M); [EMBL:FN794053]	Conobea multifida (Michx.) Benth.; V. Mühlenbach 278; (M); [EMBL:FN794088]
*Craterostigma*	Linderniaceae	Craterostigma hirsutum S.Moore; [GenBank:AF531776]	Craterostigma hirsutum S.Moore; N. Peine 2; (BONN); [EMBL:FN794054]	Craterostigma hirsutum S.Moore; N. Peine 2; (BONN); [EMBL:FN794089]
*Dermatobotrys*	Scrophulariaceae	Dermatobotrys saundersii Bolus; B. Schäferhoff 64 (BONN); [EMBL:FN773537]	Dermatobotrys saundersii Bolus; [GenBank:AJ608596]	Dermatobotrys saundersii Bolus; [GenBank:AJ609191]
*Diascia*	Scrophulariaceae	Diascia barbarae Hook.f.; [GenBank:AY667464]	Diascia capsularis Benth.; [GenBank:AJ608595]	Diascia capsularis Benth.; [GenBank:AJ609190]
*Diclis*	Scrophulariaceae	Diclis ovata Benth.; E. Fischer 10255; (BONN); [EMBL:FN773538]	Diclis ovata Benth.; E. Fischer 10255; (BONN); [EMBL:FN794055]	Diclis reptans Benth.; [GenBank:AJ609188]
*Dipteracanthus*	Acanthaceae	Dipteracanthus portellae (Hook.f.) Boom; [GenBank:AF531773 ]	Dipteracanthus portellae (Hook.f.) Boom; Kai Müller KM734; (BONN); [EMBL:FN794056]	Dipteracanthus portellae (Hook.f.) Boom; Kai Müller KM734; (BONN); [EMBL:FN794090]
*Dodartia*	Phrymaceae	Dodartia orientalis L.; N. Hölzl M34434; (M); [EMBL:FN773539]	Dodartia orientalis L.; N. Hölzl M34434; (M); [EMBL:FN794057]	Dodartia orientalis L.; N. Hölzl M34434; (M); [EMBL:FN794091]
*Elytraria*	Acanthaceae	Elytraria imbricata (Vahl) Persoon; J. Calónico S.&A. Domínguez M. 4883; (M); [EMBL:FN773540]	Elytraria imbricata (Vahl) Persoon; [GenBank:AF061819.1]	Elytraria imbricata (Vahl) Persoon; P. Döbbeler 4189; (M); [EMBL:FN794092]
*Euphrasia*	Orobanchaceae	Euphrasia stricta D. Wolff ex J.F. Lehmann; Borsch 3785; (BONN); [EMBL:FN773541]	Euphrasia stricta D. Wolff ex J.F. Lehmann; Borsch 3785; (BONN); [EMBL:FN794058]	Euphrasia stricta D. Wolff ex J.F. Lehmann; Borsch 3785; (BONN); [EMBL:FN794093]
*Forsythia*	Oleaceae	Forsythia suspensa Vahl; [GenBank:EU281175.1]	Forsythia suspensa Vahl; [GenBank:EU281157.1]	Forsythia suspensa Vahl; [GenBank:AF225231.1]
*Genlisea*	Lentibulariaceae	Genlisea aurea A.St.-Hil.; [GenBank:AF531814.1]	Genlisea aurea A.St.-Hil.; [GenBank:AF482614]	Genlisea aurea A.St.-Hil.; [GenBank:AF482540]
*Genlisea*	Lentibulariaceae	Genlisea hispidula Stapf; [GenBank:AF531815]	Genlisea hispidula Stapf; [GenBank:AF488528.1]	Genlisea hispidula Stapf; [GenBank:AF488523.1]
*Globularia*	Plantaginaceae	Globularia nudicaulis L.; [GenBank:AY667473]	Globularia trichosantha Fisch. & C.A.Mey.; [GenBank:AY591321]	Globularia repens Lam.; [GenBank:AY492206]
*Gratiola*	Plantaginaceae	Gratiola officinalis L.; [GenBank:AF531777]	Gratiola brevifolia Raf.; [GenBank:AY727201 and AY727237]	Gratiola pilosa Michx.; [GenBank:AJ609182]
*Halleria*	Stilbaceae	Halleria tetragona Baker; [GenBank:AY667476.1]	Halleria elliptica L.; [GenBank:AJ621108]	Halleria lucida L.; [GenBank:AJ609181]
*Harpagophytum*	Pedaliaceae	Harpagophytum grandidieri Baill.; [GenBank:AF531813]	Harpagophytum grandidieri Baill.; [GenBank:AF482610]	Harpagophytum grandidieri Baill.; Kai Müller KM707; (BONN); [EMBL:FN794094]
*Harveya*	Orobanchaceae	Harveya alba Hepper; E. Fischer 11547; (BONN); [EMBL:FN773564]	Harveya alba Hepper; E. Fischer 11547; (BONN); [EMBL:FN794078]	Harveya alba Hepper; E. Fischer 11547; (BONN); [EMBL:FN794095]
*Hydrotriche*	Plantaginaceae	Hydrotriche hottoniaeflora Zucc.; E. Fischer 10264; (BONN); [EMBL:FN773542]	Hydrotriche hottoniaeflora Zucc.; E. Fischer 10264; (BONN); [EMBL:FN794059]	Hydrotriche hottoniaeflora Zucc.; E. Fischer 10264; (BONN); [EMBL:FN794096]
*Ibicella*	Martyniaceae	Ibicella lutea v.Eselt; [GenBank:AF531778]	Ibicella lutea v.Eselt; Kai Müller KM735; (BONN); [EMBL:FN794060]	Ibicella lutea v.Eselt; Kai Müller KM735; (BONN); [EMBL:FN794097]
*Jacaranda*	Bignoniaceae	Jacaranda mimosifolia D.Don; [GenBank:AJ429328.1]	Jacaranda mimosifolia D.Don; [GenBank:EF105070.1]	Jacaranda mimosifolia D.Don; [GenBank:AJ431039.1]
*Jasminum*	Oleaceae	Jasminum nudiflorum Lindl.; [GenBank:AF531779.1]	Jasminum nudiflorum Lindl.; [GenBank:AF531779.1]	Jasminum nudiflorum Lindl.; [GenBank:AF531779.1]