Skip to main content

Table 3 Summary of SH tests comparing alternative phylogenetic hypotheses.

From: Untangling spider silk evolution with spidroin terminal domains

Data model Hypothesisa -ln L Score -ln L Difference Prob.
N term nu HKY+I+G Nterm nu Highest PP 10680.106 BEST 1.0000
   Nterm nu 1 of 1 MPT 10687.329 7.222 0.557
   Cterm nu Highest PP 10744.788 64.681 0.000*
   Cterm nu 1 of 2 MPT 10734.517 54.410 0.000*
   Cterm nu 2 of 2 MPT 10731.541 51.435 0.000*
   N+C term nu Highest PP 10689.373 9.266 0.431
   N+C term nu 1 of MPT 10694.996 14.889 0.247
C term nu TrN+G Nterm nu, Highest PP 6812.899 28.163 0.036*
   Nterm nu 1 of 1 MPT 6815.562 30.826 0.016*
   Cterm nu Highest PP 6784.735 BEST 1.0000
   Cterm nu 1 of 2 MPT 6791.424 6.688 0.544
   Cterm nu 2 of 2 MPT 6791.653 6.917 0.574
   N+C term nu Highest PP 6792.463 7.728 0.526
   N+C term nu 1 of MPT 6795.710 10.974 0.333
Nterm aa WAG+G Nterm aa Highest PP 5630.28 BEST 1.0000
   Nterm aa 1 of 4 MPTs 5644.44 14.15 0.4050
   Nterm aa 2 of 4 MPTs 5646.50 16.22 0.3670
   Nterm aa 3 of 4 MPTs 5635.67 5.39 0.7000
   Nterm aa 4 of 4 MPTs 5633.38 3.09 0.8200
   Cterm aa Highest PP 5665.89 35.60 0.0330*
   Cterm aa 1 of 8 MPTs 5666.24 35.95 0.0350*
   Cterm aa 2 of 8 MPTs 5668.54 38.25 0.0270*
   Cterm aa 3 of 8 MPTs 5662.15 31.86 0.0550
   Cterm aa 4 of 8 MPTs 5666.87 36.59 0.0360*
   Cterm aa 5 of 8 MPTs 5674.10 43.82 0.0120*
   Cterm aa 6 of 8 MPTs 5669.18 38.89 0.0230*
   Cterm aa 7 of 8 MPTs 5676.45 46.16 0.0070*
   Cterm aa 8 of 8 MPTs 5664.36 34.04 0.0370*
   N+C term aa Highest PP 5640.57 10.29 0.5840
   N+C term aa 1 of 1 MPT 5636.82 6.54 0.7770
Cterm aa JTT+G Nterm aa Highest PP 3404.20 38.83 0.0060*
   Nterm aa 1 of 4 MPTs 3415.87 50.50 0.0030 *
   Nterm aa 2 of 4 MPTs 3433.35 67.98 0.0000 *
   Nterm aa 3 of 4 MPTs 3438.46 73.09 0.0000 *
   Nterm aa 4 of 4 MPTs 3421.55 56.18 0.0040 *
   Cterm aa Highest PP 3365.37 BEST 1.0000
   Cterm aa 1 of 8 MPTs 3378.26 12.89 0.3920
   Cterm aa 2 of 8 MPTs 3378.20 12.82 0.3940
   Cterm aa 3 of 8 MPTs 3381.57 16.20 0.2860
   Cterm aa 4 of 8 MPTs 3381.57 16.20 0.2860
   Cterm aa 5 of 8 MPTs 3382.67 17.30 0.2740
   Cterm aa 6 of 8 MPTs 3381.54 16.16 0.2950
   Cterm aa 7 of 8 MPTs 3382.62 17.25 0.2790
   Cterm aa 8 of 8 MPTs 3381.54 16.16 0.2950
   N+C term aa Highest PP 3376.32 10.95 0.4780
   N+C term aa 1 of 1 MPT 3394.02 28.65 0.0310*
  1. a. Highest PP is Bayesian topology with highest posterior probability, * indicates topology statistically different from best topology for a given dataset and model. aa = amino acids, nu = nucleotides.