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Table 3 Summary of SH tests comparing alternative phylogenetic hypotheses.

From: Untangling spider silk evolution with spidroin terminal domains

Data

model

Hypothesisa

-ln L Score

-ln L Difference

Prob.

N term nu

HKY+I+G

Nterm nu Highest PP

10680.106

BEST

1.0000

  

Nterm nu 1 of 1 MPT

10687.329

7.222

0.557

  

Cterm nu Highest PP

10744.788

64.681

0.000*

  

Cterm nu 1 of 2 MPT

10734.517

54.410

0.000*

  

Cterm nu 2 of 2 MPT

10731.541

51.435

0.000*

  

N+C term nu Highest PP

10689.373

9.266

0.431

  

N+C term nu 1 of MPT

10694.996

14.889

0.247

C term nu

TrN+G

Nterm nu, Highest PP

6812.899

28.163

0.036*

  

Nterm nu 1 of 1 MPT

6815.562

30.826

0.016*

  

Cterm nu Highest PP

6784.735

BEST

1.0000

  

Cterm nu 1 of 2 MPT

6791.424

6.688

0.544

  

Cterm nu 2 of 2 MPT

6791.653

6.917

0.574

  

N+C term nu Highest PP

6792.463

7.728

0.526

  

N+C term nu 1 of MPT

6795.710

10.974

0.333

Nterm aa

WAG+G

Nterm aa Highest PP

5630.28

BEST

1.0000

  

Nterm aa 1 of 4 MPTs

5644.44

14.15

0.4050

  

Nterm aa 2 of 4 MPTs

5646.50

16.22

0.3670

  

Nterm aa 3 of 4 MPTs

5635.67

5.39

0.7000

  

Nterm aa 4 of 4 MPTs

5633.38

3.09

0.8200

  

Cterm aa Highest PP

5665.89

35.60

0.0330*

  

Cterm aa 1 of 8 MPTs

5666.24

35.95

0.0350*

  

Cterm aa 2 of 8 MPTs

5668.54

38.25

0.0270*

  

Cterm aa 3 of 8 MPTs

5662.15

31.86

0.0550

  

Cterm aa 4 of 8 MPTs

5666.87

36.59

0.0360*

  

Cterm aa 5 of 8 MPTs

5674.10

43.82

0.0120*

  

Cterm aa 6 of 8 MPTs

5669.18

38.89

0.0230*

  

Cterm aa 7 of 8 MPTs

5676.45

46.16

0.0070*

  

Cterm aa 8 of 8 MPTs

5664.36

34.04

0.0370*

  

N+C term aa Highest PP

5640.57

10.29

0.5840

  

N+C term aa 1 of 1 MPT

5636.82

6.54

0.7770

Cterm aa

JTT+G

Nterm aa Highest PP

3404.20

38.83

0.0060*

  

Nterm aa 1 of 4 MPTs

3415.87

50.50

0.0030 *

  

Nterm aa 2 of 4 MPTs

3433.35

67.98

0.0000 *

  

Nterm aa 3 of 4 MPTs

3438.46

73.09

0.0000 *

  

Nterm aa 4 of 4 MPTs

3421.55

56.18

0.0040 *

  

Cterm aa Highest PP

3365.37

BEST

1.0000

  

Cterm aa 1 of 8 MPTs

3378.26

12.89

0.3920

  

Cterm aa 2 of 8 MPTs

3378.20

12.82

0.3940

  

Cterm aa 3 of 8 MPTs

3381.57

16.20

0.2860

  

Cterm aa 4 of 8 MPTs

3381.57

16.20

0.2860

  

Cterm aa 5 of 8 MPTs

3382.67

17.30

0.2740

  

Cterm aa 6 of 8 MPTs

3381.54

16.16

0.2950

  

Cterm aa 7 of 8 MPTs

3382.62

17.25

0.2790

  

Cterm aa 8 of 8 MPTs

3381.54

16.16

0.2950

  

N+C term aa Highest PP

3376.32

10.95

0.4780

  

N+C term aa 1 of 1 MPT

3394.02

28.65

0.0310*

  1. a. Highest PP is Bayesian topology with highest posterior probability, * indicates topology statistically different from best topology for a given dataset and model. aa = amino acids, nu = nucleotides.
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