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Table 2 Allele divergence between pairs of single mating-type component strains belonging to nine species of the Neurospora tetrasperma species complex

From: Gene genealogies indicates abundant gene conversions and independent evolutionary histories of the mating-type chromosomes in the evolutionary history of Neurospora tetrasperma

Locusa Strain
pairb
L1A-L1a L2A-L2a L3A-L3a L4A-L4a L5A-L5a L6A-L6a L7A-L7a L8(1)A-L8(1)a L8(2)A-L8(2)a L9A-L9a
  Lineagec 1    2    3    4    5    6    7    8    8    9   
  Exon
sequences (bp)
d N d S id d N d S id d N d S id d N d S id d N d S id d N d S id d N d S id d N d S id d N d S id d N d S id
ro-10 590 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
nit-2 3293 0 0 0 0 0 0 0 0 0 0 0.001 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.002 0 0
krev-1 521 0 0.008 11 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.025 0
sod-1 465 0 0.017 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.009 0
mus-42 1680 0 0.003 - 0 0 - 0 0 - 0 0 - 0 0 - 0.001 0.018 - 0 0 - 0 0 - 0 0 - 0.006 0.060 -
rid 2560 0 0.005 - 0.001 0.004 - 0 0 - 0.010 0.033 - 0.001 0 - 0 0 - 0.001 0 - 0 0 - 0.001 0 - 0.031 0.147 -
leu-4 1863 0 0 0 0.002 0.028 9 0 0.028 3 0.001 0.007 5 0.001 0.028 9 0.001 0.028 10 0 0.030 7 0 0.014 4 0 0.014 4 0.004 0.059 8
cys-5 883 0 0 - 0 0.024 - 0.005 0.024 - 0.002 0.034 - 0 0 - 0 0 - 0.002 0.029 - 0.003 0.015 - 0.003 0.020 - 0.003 0.070 -
ser-3 922 0.004 0.025 - 0 0 - 0 0 - 0.002 0.004 - 0.007 0.047 - 0.007 0.047 - 0.002 0.004 - 0 0 - 0.002 0 - 0.006 0.074 -
tef-1 476 0 0 3 0 0.038 18 0 0.048 17 0 0.019 23 0 0.019 16 0 0.029 16 0 0.009 13 0 0.019 19 0 0.019 20 0 0.048 23
un-3 1924 0.001 0.031 - 0.002 0.048 - 0.002 0.036 - 0.002 0.028 - 0.002 0.048 - 0.003 0.048 - 0 0.048 - 0.001 0.019 - 0.001 0.019 - 0.002 0.045 -
mat                                
upr-1 2888 0.017 0.053 - 0.021 0.057 - 0.016 0.065 - 0.016 0.048 - 0.021 0.055 - 0.021 0.055 - 0.015 0.054 - 0.004 0.012 - 0.004 0.012 - 0.031 0.079 -
erg-8 1429 0 0.037 3 0.005 0.063 6 0 0.069 4 0.001 0.066 4 0.004 0.063 6 0.003 0.059 6 0.001 0.046 5 0.001 0.037 3 0.001 0.037 3 0.003 0.076 8
arg-1 1119 0 0.008 10 0.001 0.043 13 0 0 0 0 0.043 11 0.001 0.051 13 0.001 0.047 13 0 0.031 8 0 0.019 10 0 0.019 10 0 0.051 19
eth-1 866 0.005 0.005 3 0.002 0.029 5 0.003 0.029 3 0.002 0.034 3 0.002 0.029 5 0.002 0.029 5 0 0.034 4 0.002 0.024 2 0.002 0.024 2 0.002 0.054 5
centromere                               
lys-4 1055 0.001 0.049 23 0.004 0.053 30 0.005 0.057 9 0 0 0 0.004 0.061 17 0.004 0.061 17 0.006 0.038 7 0.004 0.024 13 0.020 0.020 0 0.006 0.076 15
cys-9 907 0 0.047 7 0 0.082 8 0 0.037 7 0 0.042 6 0 0.082 8 0 0.082 8 0.002 0.023 3 0 0.037 5 0 0.037 9 0 0.057 14
ad-9 609 0.004 0.035 2 0.002 0.072 1 0.002 0.057 5 0.004 0.064 3 0.022 0.072 1 0.002 0.072 1 0.007 0.072 8 0 0.007 0 0 0.007 0 0.004 0.049 3
al-1 1637 0.002 0.032 1 0.004 0.073 17 0.002 0.065 18 0.001 0.029 12 0.004 0.076 17 0.005 0.073 17 0.002 0.073 1 0.005 0.053 15 0.005 0.051 15 0.004 0.054 5
lys-3 3324 0 0.001 0 0.001 0.062 0 0 0 0 0 0 0 0.001 0.062 0 0.001 0.062 0 0.002 0.031 1 0.001 0 0 0.001 0 0 0.002 0.052 5
os-1 1749 0 0 0 0 0 0 0 0.003 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
prd-4 1475 0 0 0 0 0 0 0 0 0 0 0 0 0.001 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
arg-13 999 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
phr 1769 0 0 0 0 0 0 0.001 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
  1. a Genes are listed from the left to the right flank of the mating-type chromosome according to gene order in N. crassa. The location of the mat-locus and the centromere is indicated.
  2. b Full strain ID can be found in Table 1. All pairs, except L3A-L3a, originates from one wild-type heterokaryon of N. tetrasperma
  3. c Genetically and reproductively isolated species described in [5].
  4. d Number of single nucleotide polymorphisms in intron sequences of the genes