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Table 1 Number of nucleotide sequences and general polymorphism values of antimicrobial effectors and non immune gene

From: Molecular diversity of antimicrobial effectors in the oyster Crassostrea gigas

 

Cg-prp

Cg-defm

Cg-defhs

Cg-bpi

Cg-actin

PCR gDNA

35

11

14

0

0

PCR cDNA

57

40

43

36

40

in silico

12

2

15

1

10

total

104

53

72

37

50

different*

50

18

12

28

9

Length (bp)

177/183

195/219

195

1431

1128

SNP ratio 3

4.06

12.9

5.2

16.8

66.3

Hd

0.983

0.857

0.454

0.987

0.093

Pi

0.044

0.009

0.022

0.009

0.002

  1. *N° of sequences with a minimum of 1 nucleotide difference founded at least two times (PCR and/or in silico searches)
  2. SNP ratio: ratio of the number of polymorphic sites to the length of CDS i.e. reflect the density of polymorphic sites
  3. Hd: Proportion of different sequences
  4. Pi: nucleotide diversity
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BMC Ecology and Evolution

ISSN: 2730-7182

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