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Table 1 Number of nucleotide sequences and general polymorphism values of antimicrobial effectors and non immune gene

From: Molecular diversity of antimicrobial effectors in the oyster Crassostrea gigas

  Cg-prp Cg-defm Cg-defhs Cg-bpi Cg-actin
PCR gDNA 35 11 14 0 0
PCR cDNA 57 40 43 36 40
in silico 12 2 15 1 10
total 104 53 72 37 50
different* 50 18 12 28 9
Length (bp) 177/183 195/219 195 1431 1128
SNP ratio 3 4.06 12.9 5.2 16.8 66.3
Hd 0.983 0.857 0.454 0.987 0.093
Pi 0.044 0.009 0.022 0.009 0.002
  1. *N° of sequences with a minimum of 1 nucleotide difference founded at least two times (PCR and/or in silico searches)
  2. SNP ratio: ratio of the number of polymorphic sites to the length of CDS i.e. reflect the density of polymorphic sites
  3. Hd: Proportion of different sequences
  4. Pi: nucleotide diversity