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Table 2 Nucleotide differences between clades and putative species

From: Analysis of Canis mitochondrial DNA demonstrates high concordance between the control region and ATPase genes

Comparison (Number of haplotypes) Number of sites compared Number of fixed differences Average number of nucleotide differences between groups (%)
CR
NWCRall (h = 20) vs OWCRall (h = 9) 335 14 26.6 (7.9)
NWCR1(ew) (h = 2) vs NWCR2coyI+CR3coyII (h = 18) 337 3 10.1 (3.0)
NWCR1ew (h = 2) vs RW (h = 1) 341 7 9 (2.6)
RW (h = 1) vs NWCR2coyI+CR3coyII (h = 17) 337 2 6.6 (2.0)
NWCR2coyI (h = 11) vs NWCR3coyII (h = 7) 337 1 5.6 (1.7)
OWCR4gwNA (h = 3) vs OWCR5gwEU (h = 4) 345 3 6.1 (1.8)
ATPase
NWATPall (h = 18) vs OWATPall (h = 7) 1067 42 56.8 (5.3)
NWATP1ew (h = 2) vs NWCR2coyI+CR3coyII (h = 16) 1067 5 9.9 (0.09)
NWATPew (h = 2) vs RW (h = 1) 1067 6 8.5 (0.08)
RW (h = 1) vs NWCR2coyI+CR3coyII (h = 15) 1067 1 3.5 (0.03)
NWATP2coyI (h = 10) vs NWATP3coyII (h = 6) 1067 0 5.4 (0.05)
OWATP4gwNA (h = 3) vs OWATP4gwEU (h = 5) 1067 1 6.5 (0.06)
  1. Calculations were done in DnaSP v. 5.10. Gaps were excluded from the analysis. Comparative groups are identified in Figures 2a and 2b, and RW is the red wolf sequence identified with superscript "ruf" in Figures 2a and 2b. The dog sequence was excluded from analyses and Ccr19 was excluded from the OWCR5gwEU grouping because it clustered independently from North American and Eurasian lineages (see Figure 2a). NW = New World; OW = Old World; CR = control region.
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BMC Ecology and Evolution

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