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Table 1 Polymorphism within the mtDNA control region (CR) and ATPase regions

From: Analysis of Canis mitochondrial DNA demonstrates high concordance between the control region and ATPase genes

Clade Number of sites analyzed Sample size (n) Number of haplotypes (h) Number of variable sites (%) Nucleotide diversity (Pi) per site Pi SD
CR
AllCR 335 83 29 49 (14.6) 0.04257 0.00214
NWCRall 337 56 20 30 (8.9) 0.01718 0.00223
NWCR1ew 341 9 2 4 (1.2) 0.01173 0.00587
NWCR2coyI+CR3coyII 337 47 18 25 (7.4) 0.01424 0.00161
NWCR2coyI 338 16 7 15 (4.4) 0.0155 0.00259
NWCR3coyII 339 31 11 14 (4.1) 0.01019 0.0016
OWCRall 345 24 7 11 (3.2) 0.01408 0.00176
OWCR4gwNA 345 20 3 2 (0.6) 0.00386 0.00129
OWCR5gwEU 345 4 4 7 (2.0) 0.01208 0.00227
ATPase
AllATP 1067 89 26 104 (9.7) 0.02596 0.00177
NWATPall 1067 61 18 42 (3.9) 0.00543 0.00076
NWATP1ew 1067 12 2 5 (0.5) 0.00469 0.00234
NWATP2coyI+ATP3coyII 1067 49 16 33 (3.1) 0.00441 0.00056
NWATP2coyI 1067 37 10 16 (1.5) 0.003 0.00059
NWATP3coyII 1067 12 6 17 (1.6) 0.00594 0.00073
OWATPall 1067 27 7 19 (1.8) 0.00643 0.00157
OWATP4gwNA 1067 22 2 1 (0.09) 0.00094 0.00047
OWATP4gwEU 1067 5 5 17 (1.6) 0.00731 0.00164
ATPase6
AllATP 681 89 23 65 (9.5) 0.02513 0.00016
NWATPall 681 61 16 28 (4.1) 0.00592 0.00079
NWATP1ew 681 12 2 5 (0.7) 0.00734 0.00367
NWATP2coyI+ATP3coyII 681 49 14 22 (3.2) 0.00495 0.00064
OWATPall 681 27 7 16 (2.3) 0.00839 0.00133
OWATP4gwNA 681 22 2 1 (0.1) 0.00147 0.00073
OWATP4gwEU 681 5 5 14 (2.1) 0.00881 0.00142
ATPase8
AllATP 204 89 14 23 (11.3) 0.03507 0.00629
NWATPall 204 61 10 10 (4.9) 0.0111 0.00143
OWATPall 204 27 4 4 (2.0) 0.01062 0.00311
  1. Analysis was conducted in DnaSP v. 5.10 with nucleotide diversity calculated according to [60]. Gaps were excluded in the analysis. The full 1067 bp of the ATPase region is section 7729 - 8795 in the Canis complete mtDNA genome (Genbank Accession DQ480510) and includes gene regions ATPase8 (204 bp), ATPase6 (681 bp), plus flanking regions that overlap with COX2 and COX3 genes. Subscripts refer to clade designations in Figures 2a and 2b. CR = control region; SD=standard deviation.
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