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Table 6 ML bootstrap-based (boot.) and aLRT-based confidence values derived from different character supermatrices.

From: BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

  

(1)

(1')

(2)

(3)

  

boot.

aLRT

aLRT

boot.

aLRT

boot.

aLRT

initial

 

0.60

0.389

1.000

0.92

0.919

0.07

0.000

BMGE

(BLOSUM30)

0.65

0.673

0.999

0.86

0.864

0.06

0.000

BMGE

(BLOSUM62)

0.78

0.725

1.000

0.42

0.296

0.29

0.000

BMGE

(BLOSUM95)

0.83

0.826

0.999

0.21

0.000

0.46

0.711

Gblocks

(relaxed)

0.64

0.311

0.999

0.80

0.895

0.10

0.000

trimAl

(strictplus)

0.59

0.379

0.999

0.91

0.973

0.03

0.000

trimAl

(automated1)

0.74

0.686

1.000

0.93

0.955

0.05

0.000

Noisy

 

0.81

0.936

1.000

0.77

0.776

0.22

0.000

  1. Nodes (1), (1'), (2) and (3) are indicated on the phylogenetic trees in Figure 6. Nodes (1) and (1') correspond to the monophyly of Unikonts. Paraphyly and monophyly of Archaeplastida correspond to nodes (2) and (3), respectively. For each column, the best (i.e. higher) confidence value is written in boldface characters.