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Table 4 Average quartet distances between the model trees and the MP trees inferred from the different trimmed multiple sequence alignments

From: BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

  

Level of divergence

  

×1

×2

×3

initial

 

0.1858

0.1639

0.1587

BMGE

(BLOSUM30)

0.1189

0.0601

0.0780

BMGE

(BLOSUM62)

0.0949

0.0610

0.3011

BMGE

(BLOSUM95)

0.0884

0.0630

0.3194

Gblocks

(relaxed)

0.0677

0.0608

0.1026

trimAl

(strictplus)

0.1211

0.1085

0.1182

trimAl

(automated1)

0.1435

0.1142

0.1230

Noisy

 

0.1073

0.0965

0.0983

  1. For each column, the best (i.e. lower) distance is written in boldface characters. Average quartet distances that are not significantly different to this best value (as assessed by a sign test) are underscored.
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BMC Ecology and Evolution

ISSN: 2730-7182

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