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Table 3 Average quartet distances between the model trees and the BioNJ trees inferred from the different trimmed multiple sequence alignments

From: BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

  

Level of divergence

  

×1

×2

×3

initial

 

0.1500

0.2110

0.2441

BMGE

(BLOSUM30)

0.0967

0.0669

0.0861

BMGE

(BLOSUM62)

0.0646

0.0668

0.1073

BMGE

(BLOSUM95)

0.0626

0.0651

0.1164

Gblocks

(relaxed)

0.0569

0.0668

0.0988

trimAl

(strictplus)

0.1027

0.1271

0.1798

trimAl

(automated1)

0.1055

0.1293

0.1820

Noisy

 

0.0768

0.0892

0.1141

  1. For each column, the best (i.e. lower) distance is written in boldface characters. Average quartet distances that are not significantly different to this best value (as assessed by a sign test) are underscored.