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Table 1 ROCO Kinase Domain CDD Hits

From: A phylogenetic survey of myotubularin genes of eukaryotes: distribution, protein structure, evolution, and gene expression

Query Sequence

NCBI CDD Hits

E values

EHI_137960

cd00180, S_TKc

cd00192, PTKc

4.00E-35

2.00E-32

EHI_151670

cd00192, PTKc

cd00180, S_TKc

8.00E-38

1.00E-29

EHI_135010

cd00192, PTKc

cd00180, S_TKc

5.00E-33

7.00E-28

EHI_048230

cd00180, S_TKc

cd00192, PTKc

1.00E-28

5.00E-26

EHI_107230

cd00192, PTKc

cd00180, S_TKc

1.00E-35

2.00E-26

EHI_185230

cd00180, S_TKc

cd00192, PTKc

8.00E-34

3.00E-32

EHI_078170

cd00192, PTKc

cd00180, S_TKc

7.00E-37

1.00E-31

EHI_141820

cd00192, PTKc

cd00180, S_TKc

1.00E-45

3.00E-41

EHI_197200

cd00192, PTKc

cd00180, S_TKc

2.00E-35

3.00E-31

DDB0191503

cd00192, PTKc

cd00180, S_TKc

2.00E-52

1.00E-38

DDB0191512

cd00192, PTKc

cd00180, S_TKc

3.00E-40

3.00E-38

HuLRRK2

cd00180, S_TKc

cd00192, PTKc

3.00E-38

5.00E-36

HuPKAalpha1

cd00180, S_TKc

cd00192, PTKc

3.00E-82

3.00E-22

SRC_Hu

cd00192, PTKc

cd00180, S_TKc

3.00E-104

9.00E-51

  1. Myotubularin homologue sequences were identified, and protein kinase domains identified, as described in Methods. Protein kinase domains were subjected to analysis at NCBI CDD [40, 41]. This table summarizes the returns for those searches - the query sequences, the hit models, and E values. Models: cd00180, S_TKc (Serine/Threonine protein kinases, catalytic domain); cd00192, PTKc (Catalytic Domain of Protein Tyrosine Kinases).
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BMC Ecology and Evolution

ISSN: 2730-7182

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