From: Revisiting the taxonomy of the Rattini tribe: a phylogeny-based delimitation of species boundaries
Sample information | Â | Â | Â | GenBank Accession Number | |||
---|---|---|---|---|---|---|---|
Laboratory sample number | Field Identification | Locality | Voucher localisation | Phylogenetic species | Cyt b | COI | IRBP |
MDZ10Mada | Rattus rattus | Madagascar | Â | R1 | HM217368 | HM217495 | HM217603 |
ratcosT820 | Rattus rattus | India | Â | R1 | HM217367 | HM217498 | HM217606 |
ratcosR12 | Rattus rattus | Oman | Â | R1 | HM217366 | HM217496 | HM217604 |
ratcosTE4264 | Rattus rattus | Tanzania | Â | R1 | HM217365 | HM217497 | HM217605 |
R4003 | Rattus tanezumi | Kalasin (Thailand) | MahaU | R2 | HM217436 | HM217563 | HM217673 |
R2953 | Rattus tanezumi | Kanchanaburi (Thailand) | Â | R7 | HM217396 | HM217525 | HM217634 |
R2996 | Rattus tanezumi | Kanchanaburi (Thailand) | Â | R2 | HM217398 | HM217529 | HM217636 |
R3122 | Rattus tanezumi | Kanchanaburi (Thailand) | Â | R2 | HM217407 | HM217537 | HM217645 |
R3214 | Rattus tanezumi | Kanchanaburi (Thailand) | Â | R2 | HM217410 | HM217540 | HM217648 |
R3573 | Rattus tanezumi | Nakhon Pathom (Thailand) | KU | R2 | HM217430 | HM217558 | HM217667 |
R4016 | Rattus tanezumi | Phrae (Thailand) | CBGP | R2 | HM217438 | HM217565 | HM217675 |
R4424 | Rattus tanezumi | Phrae (Thailand) | MahaU | R2 | HM217456 | HM217582 | HM217693 |
R4436 | Rattus tanezumi | Phrae (Thailand) | MahaU | R2 | HM217457 | HM217583 | HM217694 |
R5294 | Rattus tanezumi | Nan (Thailand) | MahaU | R2 | HM217466 | HM217592 | HM217704 |
R5296 | Rattus tanezumi | Nan (Thailand) | CBGP | R2 | HM217467 | HM217593 | HM217705 |
L0100 | Rattus tanezumi | Luang Prabang (LPDR) | MahaU | R2 | HM217475 | HM217489 | HM217712 |
L0194 | Rattus tanezumi | Luang Prabang (LPDR) | MahaU | R2 | HM217480 | HM217494 | HM217717 |
R3029 | Rattus tanezumi | Bangkok (Thailand) | Â | R3 | HM217399 | HM217530 | HM217637 |
R1843 | Rattus tanezumi | Krabi (Thailand) | Â | R3 | HM217393 | HM217524 | HM217631 |
R1147 | Rattus tanezumi | Nakhon Ratchasima (Thailand) | Â | R3 | HM217384 | HM217515 | HM217622 |
R1016 | Rattus tanezumi | Nakhon Ratchasima (Thailand) | Â | R3 | HM217382 | HM217513 | HM217620 |
R1818 | Rattus tanezumi | Prachinburi (Thailand) | Â | R3 | HM217389 | HM217520 | HM217627 |
R2794 | Rattus tanezumi | Ratchaburi (Thailand) | Â | R3 | HM217394 | HM217526 | HM217632 |
R0169 | Rattus tanezumi | Ratchaburi (Thailand) | Â | R3 | HM217372 | HM217503 | HM217610 |
CB0028 | Rattus tanezumi | Veal Renh (Cambodia) | MahaU | R3 | HM217363 | HM217485 | HM217601 |
R1833 | Rattus tanezumi | Nakhon Sri Thammarat (Thailand) | Â | R5 | HM217391 | HM217522 | HM217629 |
R4402 | Rattus losea | Loei (Thailand) | MahaU | R4 | HM217454 | HM217581 | HM217691 |
R3484 | Rattus losea | Loei (Thailand) | Â | R4 | HM217421 | HM217550 | HM217659 |
R4230 | Rattus losea | Loei (Thailand) | CBGP | R4 | HM217446 | HM217573 | HM217683 |
R1015 | Rattus losea | Nakhon Ratchasima (Thailand) | Â | R4 | HM217381 | HM217512 | HM217619 |
R4203 | Rattus losea | Phrae (Thailand) | CBGP | R4 | HM217443 | HM217570 | HM217680 |
R3510 | Rattus losea | Phrae (Thailand) | Â | R4 | HM217423 | HM217552 | HM217661 |
R0237 | Rattus losea | Ratchaburi (Thailand) | Â | R4 | HM217374 | HM217505 | HM217612 |
R0238 | Rattus losea | Ratchaburi (Thailand) | Â | R4 | HM217375 | HM217506 | HM217613 |
R1805 | Rattus exulans | Bangkok (Thailand) | Â | R8 | HM217388 | HM217519 | HM217626 |
R4004 | Rattus exulans | Kalasin (Thailand) | MahaU | R8 | HM217437 | HM217564 | HM217674 |
R3224 | Rattus exulans | Kanchanaburi (Thailand) | Â | R8 | HM217411 | HM217541 | HM217649 |
R4103 | Rattus exulans | Loei (Thailand) | MahaU | R8 | HM217440 | HM217567 | HM217677 |
R1055 | Rattus exulans | Nakhon Ratchasima (Thailand) | Â | R8 | HM217383 | HM217514 | HM217621 |
R1836 | Rattus exulans | Nakhon Sri Thammarat (Thailand) | Â | R8 | HM217392 | HM217523 | HM217630 |
R4140 | Rattus exulans | Phrae (Thailand) | MahaU | R8 | HM217441 | HM217568 | HM217678 |
R0284 | Rattus exulans | Ratchaburi (Thailand) | Â | R8 | HM217377 | HM217508 | HM217615 |
R2795 | Rattus exulans | Ratchaburi (Thailand) | Â | R8 | HM217395 | HM217527 | HM217633 |
R3520 | Rattus exulans | Sakhon Nakhon (Thailand) | MahiU | R8 | HM217424 | HM217553 | HM217662 |
R3563 | Rattus exulans | Surat Thani (Thailand) | KU | R8 | HM217428 | HM217557 | HM217666 |
R5349 | Rattus exulans | Nan (Thailand) | CBGP | R8 | HM217470 | HM217595 | HM217703 |
R5447 | Rattus exulans | Nan (Thailand) | CBGP | R8 | HM217472 | HM217596 | HM217708 |
CB0001 | Rattus argentiventer | Veal Renh (Cambodia) | MahaU | R6 | HM217362 | HM217484 | HM217600 |
CB0104 | Rattus argentiventer | Veal Renh (Cambodia) | MahaU | R6 | HM217364 | HM217486 | HM217602 |
R3087 | Rattus andamanensis | Kanchanaburi (Thailand) | Â | R7 | HM217403 | HM217533 | HM217641 |
R4377 | Rattus andamanensis | Loei (Thailand) | MahaU | R2 | HM217452 | HM217579 | HM217689 |
R3548 | Rattus andamanensis | Phrae (Thailand) | KU | R2 | HM217426 | HM217555 | HM217664 |
R4481 | Rattus andamanensis | Phrae (Thailand) | MahaU | R2 | HM217458 | HM217584 | HM217695 |
R0130 | Rattus andamanensis | Ratchaburi (Thailand) | Â | R2 | HM217371 | HM217502 | HM217608 |
R2976 | Rattus andamanensis | Nakhon Pathom (Thailand) | Â | R3 | HM217397 | HM217528 | HM217635 |
R3565 | Rattus norvegicus | Nakhon Pathom (Thailand) | MahiU | R9 | HM217429 | - | - |
R0223 | Rattus norvegicus | Ratchaburi (Thailand) | Â | R9 | HM217373 | HM217504 | HM217611 |
R0115 | Rattus norvegicus | Ratchaburi (Thailand) | Â | R9 | HM217370 | HM217501 | HM217609 |
RNO 032 | Rattus norvegicus | Cambodia | Â | R9 | HM217481 | HM217499 | - |
L0180 | Rattus nitidus | Luang Prabang (LPDR) | MahaU | R10 | HM217478 | HM217492 | HM217715 |
L0192 | Rattus nitidus | Luang Prabang (LPDR) | MahaU | R10 | HM217479 | HM217493 | HM217716 |
R4188 | Rattus sp. | Phrae (Thailand) | CBGP | R3 | HM217442 | HM217569 | HM217679 |
L0010 | Rattus sp. | Luang Prabang (LPDR) | MahaU | R10 | HM217474 | HM217488 | HM217711 |
R0856 | Bandicota indica | Nakhon Pathom (Thailand) | Â | R8 | HM217379 | HM217510 | HM217617 |
R4001 | Bandicota indica | Kalasin (Thailand) | MahaU | B1 | HM217435 | - | HM217672 |
R3189 | Bandicota indica | Kanchanaburi (Thailand) | Â | B1 | HM217408 | HM217538 | HM217646 |
R4265 | Bandicota indica | Loei (Thailand) | CBGP | B1 | HM217447 | HM217574 | HM217684 |
R1006 | Bandicota indica | Nakhon Ratchasima (Thailand) | Â | B1 | HM217380 | HM217511 | HM217618 |
R3521 | Bandicota indica | Phrae (Thailand) | KU | B1 | HM217425 | HM217554 | HM217663 |
R0269 | Bandicota indica | Ratchaburi (Thailand) | Â | B1 | HM217376 | HM217507 | HM217614 |
R0304 | Bandicota indica | Ratchaburi (Thailand) | Â | B1 | HM217378 | HM217509 | HM217616 |
R5313 | Bandicota indica | Nan (Thailand) | MahaU | B1 | HM217469 | HM217594 | HM217706 |
L0142 | Bandicota indica | Luang Prabang (LPDR) | MahaU | B1 | HM217476 | HM217490 | HM217713 |
R4408 | Bandicota indica | Loei (Thailand) | CBGP | B2 | HM217455 | - | HM217692 |
R1284 | Bandicota savilei | Nakhon Ratchasima (Thailand) | Â | B1 | HM217386 | HM217517 | HM217624 |
R1822 | Bandicota savilei | Nakhon Pathom (Thailand) | Â | B1 | HM217390 | HM217521 | HM217628 |
R1797 | Bandicota savilei | Kanchanaburi (Thailand) | Â | B2 | HM217387 | HM217518 | HM217625 |
R1191 | Bandicota savilei | Nakhon Ratchasima (Thailand) | Â | B2 | HM217385 | HM217516 | HM217623 |
R3550 | Bandicota savilei | Phrae (Thailand) | KU | B2 | HM217427 | HM217556 | HM217665 |
R0093 | Bandicota sp. | Ratchaburi (Thailand) | Â | B2 | HM217369 | HM217500 | HM217607 |
R3050 | Berylmys berdmorei | Kanchanaburi (Thailand) | Â | Be1 | HM217401 | HM217532 | HM217639 |
R4266 | Berylmys berdmorei | Loei (Thailand) | CBGP | Be1 | HM217448 | HM217575 | HM217685 |
R3441 | Berylmys berdmorei | Loei (Thailand) | MahiU | Be1 | HM217418 | HM217547 | HM217656 |
R5310 | Berylmys berdmorei | Nan (Thailand) | MahaU | Be1 | HM217468 | - | HM217709 |
L0006 | Berylmys berdmorei | Luang Prabang (LPDR) | MahaU | Be1 | HM217473 | HM217487 | HM217710 |
R3618 | Berylmys berdmorei | Phrae (Thailand) | KU | Be1 | HM217432 | HM217560 | HM217669 |
R3603 | Berylmys berdmorei | Phrae (Thailand) | KU | Be1 | HM217431 | HM217559 | HM217668 |
R4400 | Berylmys bowersi | Loei (Thailand) | MahaU | Be2, a | HM217453 | HM217580 | HM217690 |
R3425 | Berylmys bowersi | Loei (Thailand) | KU | Be2, a | HM217415 | HM217544 | HM217653 |
R3415 | Berylmys bowersi | Loei (Thailand) | KU | Be2, a | HM217413 | HM217542 | HM217651 |
R5410 | Berylmys bowersi | Nan (Thailand) | MahaU | Be2, a | HM217471 | - | HM217707 |
L0151 | Berylmys bowersi | Luang Prabang (LPDR) | MahaU | Be2, a | HM217477 | HM217491 | HM217714 |
R3268 | Berylmys bowersi | Kanchanaburi (Thailand) | KU | Be2, b | HM217412 | HM217597 | HM217650 |
R4098 | Leopoldamys sabanus | Loei (Thailand) | CBGP | L1 | HM217439 | HM217566 | HM217676 |
R4222 | Leopoldamys sabanus | Loei (Thailand) | MahaU | L1 | HM217444 | HM217571 | HM217681 |
R4296 | Leopoldamys sabanus | Phrae (Thailand) | MahaU | L1 | HM217450 | HM217577 | HM217687 |
R4276 | Leopoldamys sabanus | Phrae (Thailand) | CBGP | L1 | HM217449 | HM217576 | HM217686 |
R4370 | Leopoldamys sabanus | Phrae (Thailand) | CBGP | L1 | HM217451 | HM217578 | HM217688 |
R3111 | Leopoldamys sabanus | Kanchanaburi (Thailand) | Â | L3 | HM217404 | HM217534 | HM217642 |
R3033 | Leopoldamys sabanus | Kanchanaburi (Thailand) | Â | L3 | HM217400 | HM217531 | HM217638 |
R4517 | Leopoldamys neilli | Loei (Thailand) | MahaU | L2 | HM217462 | HM217588 | HM217699 |
R4527 | Leopoldamys neilli | Loei (Thailand) | MahaU | L2 | HM217463 | HM217590 | HM217701 |
R4486 | Leopoldamys neilli | Phrae (Thailand) | MahaU | L2 | HM217460 | HM217586 | HM217697 |
R4485 | Leopoldamys neilli | Phrae (Thailand) | MahaU | L2 | HM217459 | HM217585 | HM217696 |
R3419 | Leopoldamys sp. | Loei (Thailand) | KU | L1 | HM217414 | HM217543 | HM217652 |
R4723 | Niviventer fulvescens | Loei (Thailand) | MahaU | N1 | HM217465 | HM217591 | HM217702 |
R3212 | Niviventer fulvescens | Kanchanaburi (Thailand) | KU | N2 | HM217409 | HM217539 | HM217647 |
R4525 | Niviventer sp. | Loei (Thailand) | MahaU | N1 | HM217464 | HM217589 | HM217700 |
R3427 | Niviventer sp. | Loei (Thailand) | KU | N1 | HM217416 | HM217545 | HM217654 |
R3429 | Niviventer sp. | Loei (Thailand) | KU | N1 | HM217417 | HM217546 | HM217655 |
R3459 | Niviventer sp. | Loei (Thailand) | KU | N1 | HM217419 | HM217548 | HM217657 |
R4497 | Niviventer sp. | Phrae (Thailand) | MahaU | N1 | HM217461 | HM217587 | HM217698 |
R3492 | Niviventer sp. | Loei (Thailand) | KU | N1 | HM217422 | HM217551 | HM217660 |
R3077 | Niviventer sp. | Kanchanaburi (Thailand) | MahiU | N3 | HM217402 | - | HM217640 |
R3795 | Nu Deng* | Khammouane (LPDR) | MahiU | N4 | HM217433 | HM217561 | HM217670 |
R3796 | Nu Deng* | Khammouane (LPDR) | MahiU | N4 | HM217434 | HM217562 | HM217671 |
R3118 | Maxomys surifer | Kanchanaburi (Thailand) | Â | M1 | HM217406 | HM217536 | HM217644 |
R3116 | Maxomys surifer | Kanchanaburi (Thailand) | Â | M1 | HM217405 | HM217535 | HM217643 |
R4223 | Maxomys surifer | Loei (Thailand) | CBGP | M2 | HM217445 | HM217572 | HM217682 |
R3464 | Maxomys surifer | Loei (Thailand) | KU | M2 | HM217420 | HM217549 | HM217658 |
MK0509 BZ02 | Micromys minutus | China | CBGP | Outgroup | HM217360 | HM217482 | HM217598 |
MK0509 BZ07 | Micromys minutus | China | CBGP | Outgroup | HM217361 | HM217483 | HM217599 |