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Table 2 Mean diversity measures for 48 STS loci

From: Genomic patterns of nucleotide diversity in divergent populations of U.S. weedy rice

   U.S. weedy rice populations O. sativapopulations
Statistic Site type O. rufipogon All Weedy SH BHA1 BHA2 BRH O. sativa indica Aus temp.
japonica
trop.
japonica
aromatic
θ W per Kb All 5.606 1.363 0.490 0.827 0.619 0.278 2.292 1.650 1.092 0.814 1.370 1.590
  Silent 7.787 1.694 0.638 0.933 0.695 0.349 2.985 2.216 1.401 1.050 1.694 2.353
  Non-synonymous 2.830 0.540 0.300 0.420 0.460 0.100 1.030 0.670 0.950 0.300 0.570 0.340
  Synonymous 9.015 1.896 0.585 0.736 0.424 - 3.204 2.225 1.308 0.263 1.716 3.510
θπ per Kb All 4.382 1.480 0.564 0.750 0.564 0.230 2.461 1.614 1.189 0.552 1.073 1.447
  Silent 6.354 1.848 0.692 0.829 0.657 0.311 3.278 2.179 1.568 0.650 1.337 2.176
  Non-synonymous 1.790 0.754 0.337 0.463 0.373 0.080 0.750 0.584 0.883 0.360 0.405 0.300
  Synonymous 7.019 1.312 0.505 0.650 0.476 - 4.228 1.982 1.026 0.345 1.257 3.029
Tajima's D All -0.729 0.220 -0.441 -0.177 0.042 -0.266 0.232 -0.026 0.092 -0.754 -0.773 -0.408
  Silent -0.607 0.240 -0.404 -0.173 0.017 0.013 0.354 0.039 0.145 -1.043 -0.731 -0.451
  Non-synonymous -0.724 0.358 -0.155 -0.132 -0.185 -0.197 0.339 -0.132 0.277 -0.816 -0.685 -0.214
  Synonymous -0.442 -0.343 -0.355 -0.165 0.484 - 0.383 0.030 1.081 -0.498 -0.826 -0.629
# of polymorphic STS (all sites) 48 35 12 14 12 3 43 33 26 21 33 19
# of polymorphic STS (silent sites) 48 33 11 13 11 2 39 30 23 18 26 18