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Table 1 Genomes used in our analyses

From: Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach

Organism Reference Protein Database
Apis mellifera (bee) [85] protein (8/7/2006), NCBI
Bombyx mori (silkworm) [86] GLEAN merged consensus, silkworm genome consortium
Branchiostoma floridae (lancelet) [87] annotated proteins v1
Capitella spI (capitella) [JGI, unpublished data] filtered models v1, JGI
Caenorhabditis elegans (roundworm) [88] WS180.49 peptides, wormbase
Ciona intestinalis (tunicate) [89] filtered models v1, JGI
Danio rerio (zebrafish) NCBI protein (6/11/2008)
Daphnia pulex (waterflea) [JGI, unpublished data] filtered models v1.1, JGI
Drosophila melanogaster (fruit fly) NCBI BDGP5.4.49 peptides
Gallus gallus (chick) NCBI protein (11/28/2006)
Helobdella robusta (leech) [JGI, unpublished data] filtered models v3, JGI
Lottia gigantea (snail) [JGI, unpublished data] filtered models v1, JGI
Monosiga brevicollis (monosiga) [90] filtered models v1, JGI
Mus musculus (mouse) NCBI annotated proteins v3,
Nematostella vectensis (anemone) [91] filtered models v1, JGI
Takifugu rubripes (pufferfish) [JGI, unpublished data [92]] filtered models v4, JGI
Tribolium castaneum (beetle) NCBI protein (6/5/2008)
Trichoplax adhaerens (trichoplax) JGI filtered models v1, JGI
Xenopus tropicalis (frog) JGI filtered models v4, JGI