Skip to main content

Table 2 Number of transcript-SNP pairs (number of SNPs)

From: A comprehensive survey of human polymorphisms at conserved splice dinucleotides and its evolutionary relationship with alternative splicing

  

Constituitive

Altenative

  

Exclusive case1)

Shared case2)

Total case

Exclusive case1)

Canonical

 

87

13

100

35

 

GT-AG

(27)

(6)

(33)

(24)

Non-canonical

GC-AG

0

7

7

1

  

(0)

(3)

(3)

(1)

 

AT-AG

1

2

3

3

  

(1)

(2)

(3)

(3)

 

CT-AG

6

0

6

1

  

(3)

(0)

(3)

(1)

 

GA-AG

0

0

0

1

  

(0)

(0)

(0)

(1)

 

GT-AA

9

0

9

1

  

(4)

(0)

(4)

(1)

 

GT-AC

5

0

5

3

  

(1)

(0)

(1)

(3)

 

GT-AT

0

1

1

1

  

(0)

(1)

(1)

(1)

 

GT-GG

6

0

6

0

  

(2)

(0)

(2)

(0)

 

GT-TG

37

0

37

1

  

(1)

(0)

(1)

(1)

 

TT-AG

1

0

1

0

  

(1)

(0)

(1)

(0)

 

Subtotal

65

10

75

12

  

(13)

(6)

(19)

(12)

Total

 

152

23

175

47

  

(40)

(12)

(52)

(36)

  1. 1) Only a single allele is predicted for all transcripts. This includes all SNPs flanked by AS exons.
  2. 2) Both alleles were predicted depending on transcript. This was found only in constitutive exons.