|
Properties of sdSNP
|
on ASEs
|
on CSEs
|
|---|
|
Heterozygosity1)
|
0.24
|
(S.E. 0.03)
|
0.19
|
(S.E. 0.03)
|
|
SNP density2)
|
0.030%
|
0.037%
|
|
#HITs accordance with GT-AG rule3)
|
35/47
|
(74%)
|
100/175
|
(57%)
|
|
Splice score with matched allele4)
|
8.534
|
(S.E. 0.454)
|
7.835
|
(S.E. 0.600)
|
|
Splice score Δ two alleles5)
|
8.225
|
(S.E. 0.087)
|
8.235
|
(S.E. 0.128)
|
- 1) Average heterozygosity of sdSNPs.
- 2) Density of SNPs in splice dinucleotides. Note that the SNP density in intron regions is 0.139%.
- 3) Number of transcripts whose splice sites satisfy the GT-AG rule with the predicted allele/number of transcripts performed allele prediction assuming LD with the nearest cSNP. See Process 5 in Figure 2.
- 4) Average score of splice sites with the predicted alleles meeting the GT-AG rule. Splice scores were calculated using the MaxEnt program.
- 5) Average differences in score between the two splice sites from the two alleles of each sdSNP.
