From: Evidence for late Pleistocene origin of Astyanax mexicanus cavefish
Synonymous | Non-coding | Non-synonymous | |||||
---|---|---|---|---|---|---|---|
Class | n | % | n | % | n | % | |
Ancestral fixed SF, derived fixed CF | (1) | 540 | 12.8 | 157 | 12.7 | 301 | 14.3 |
Ancestral fixed CF, derived fixed SF | (2) | 280 | 6.7 | 111 | 9.0 | 210 | 10.0 |
Polymorphism CF, ancestral fixed SF | (3) | 476 | 11.3 | 146 | 11.8 | 302 | 14.5 |
Polymorphism CF, derived fixed SF | (4) | 119 | 2.8 | 57 | 4.6 | 91 | 4.4 |
Polymorphism SF, ancestral fixed CF | (5) | 2086 | 49.6 | 601 | 48.5 | 923 | 43.6 |
Polymorphism SF, derived fixed CF | (6) | 393 | 9.3 | 87 | 7.0 | 159 | 7.8 |
Shared polymorphism | (7) | 309 | 7.4 | 80 | 6.5 | 123 | 5.9 |
Divergent | (8) | 1 | 0.0 | 0 | 0.0 | 0 | 0.0 |
Total | 4204 | 100.0 | 1239 | 100.0 | 2110 | 100.0 | |
Polymorphism SF | (5 + 6 + 7) | 2788 | 768 | 1205 | |||
Polymorphism CF | (3 + 4 + 7) | 904 | 283 | 516 | |||
Ratio SF/CF | 3.08 | 2.71 | 2.34 | ||||
Derived and fixed SF | (2 + 4) | 399 | 168 | 302 | |||
Derived and fixed CF | (1 + 6) | 933 | 244 | 460 | |||
Ratio CF/SF | 2.34 | 1.45 | 1.52 |